Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs116114077 chr4:187810733 G/A 1.9E-6 485 31.23 28.57 26.8 KM Plot
PRAD rs116139393 chr7:6771660 C/G 8.6E-5 478 30.97 31.3 38.33 KM Plot
PRAD rs11617048 chr13:20199716 A/G 2.87E-5 483 31 31.3 22.67 KM Plot
PRAD rs11618992 chr13:20215569 T/G 2.63E-5 488 30.73 32.3 22.67 KM Plot
PRAD rs116248354 chr1:93654998 G/C 1.07E-8 494 31.33 28.13 9.17 KM Plot
PRAD rs116249212 chr1:220254613 G/A 4.25E-5 481 31.23 24.9 39.5 KM Plot
PRAD rs116261092 chr4:187811357 C/T 2.06E-6 483 31.13 28.57 26.8 KM Plot
PRAD rs116290325 chr4:187812241 A/C 2.16E-6 481 31.13 28.57 26.8 KM Plot
PRAD rs116353047 chr4:187811319 A/G 2.06E-6 483 31.13 28.57 26.8 KM Plot
PRAD rs116360498 chr1:201144200 C/A 2.48E-5 494 30.27 31.22 42.43 KM Plot
PRAD rs11642379 chr16:5003326 C/T 4.86E-5 474 31.27 29.63 27.77 KM Plot
PRAD rs11645150 chr16:5005222 C/G 0.00012 494 31.27 30.27 26.37 KM Plot
PRAD rs116477163 chr2:112937764 A/C 2.86E-5 481 30.87 27.97 26.23 KM Plot
PRAD rs11648944 chr16:22249554 G/A 3.25E-9 480 30.3 35.32 28.25 KM Plot
PRAD rs116516172 chr4:187812324 T/C 2.09E-6 482 31.07 28.93 26.8 KM Plot